[Mono-list] Mono & Command Line

Ian Norton ian.norton-badrul at thales-esecurity.com
Mon Aug 13 13:13:11 UTC 2012

On 06/08/2012 21:09, ashkot wrote:
> Hi all,
> I am using C# on Mono on Ubuntu and found some code that uses process info
> class that allows for executing shell commands.
> I have an issue where in a command such as
> sudo samtools sort file1.bam  file1.sorted
> is executed OK, where as the following command is not.
> sudo samtools mpileup -uf ref.fasta file1.sorted.bam | bcftools view -bvcg -
>> file.bcf
> Any ideas??
> Thanks,
> A
What goes wrong? what kind of error do you get?

Is it to do with option parsing or permissions?

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