[Mono-list] Mono & Command Line

[Ian Norton]

On 06/08/2012 21:09, ashkot wrote:
> Hi all,
> I am using C# on Mono on Ubuntu and found some code that uses process info
> class that allows for executing shell commands.
>
> I have an issue where in a command such as
>
> sudo samtools sort file1.bam  file1.sorted
>
> is executed OK, where as the following command is not.
>
> sudo samtools mpileup -uf ref.fasta file1.sorted.bam | bcftools view -bvcg -
>> file.bcf
> Any ideas??
>
> Thanks,
> A
What goes wrong? what kind of error do you get?

Is it to do with option parsing or permissions?