[Mono-list] Mono & Command Line

[ashkot]

Hi all,
I am using C# on Mono on Ubuntu and found some code that uses process info
class that allows for executing shell commands.

I have an issue where in a command such as 

sudo samtools sort file1.bam  file1.sorted

is executed OK, where as the following command is not.

sudo samtools mpileup -uf ref.fasta file1.sorted.bam | bcftools view -bvcg -
> file.bcf

Any ideas??

Thanks,
A



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